PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen07g026270.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 244aa    MW: 27378 Da    PI: 5.5083
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen07g026270.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.32.7e-0886130451
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYI 51 
                       ++  rE+ RRdr+N++f  L ++l +    + +K +K++iL  A + +
  Sopen07g026270.1  86 SKACREKLRRDRLNERFLALSSVLDPG---RPPKTEKVAILSDAQRML 130
                       6789**********************8...88**********998776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.05582133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.50E-685138No hitNo description
PfamPF000109.5E-686131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-1187147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-1287158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.3E-788139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:1.20.5.1703.9E-4148181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MEVDSSGNPN WLFDYELMTD ITSAASVTVA EFQSPATIDF SWPAQTIYAS SNLITETDYT  60
FADSEVSKEA SSRKRLKSEC CSSPRSKACR EKLRRDRLNE RFLALSSVLD PGRPPKTEKV  120
AILSDAQRML IELRTETQKL KESNEELQEK IKELKAEKNE LRDEKQRLKE EKDNLEQQVK  180
SLASKPGFLS HPSAMGAAFT AQGQVAAGNK LMPFIGYPSV AMWQFMQPAV VDTSQDHVLR  240
PPVA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754461e-150HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015080608.10.0PREDICTED: transcription factor ILR3-like
RefseqXP_015080609.10.0PREDICTED: transcription factor ILR3-like
SwissprotQ9FH375e-84ILR3_ARATH; Transcription factor ILR3
TrEMBLK4CFG60.0K4CFG6_SOLLC; Uncharacterized protein
STRINGSolyc07g052670.2.11e-180(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9502482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.13e-85bHLH family protein